PUTATIVE SSP GENE FAMILY INFORMATION


Here you can find a list of 214 Putative SSP gene families predicted for Medicago truncatula and their main description.

There are 2,451 putative SSPs including 1,230 singletons. These 214 families are from the identification of 2,451 putative SSPs predicted from short (< 230 aas), secreted proteins (> 0.45 SignalP D-value) and no homology with known SSPs. We also provide Hidden Markov Models for 59 gene families with at least 5 members.




SUMMARY OF PUTATIVE SSP GENE FAMILIES



GENE FAMILY NAME CLASS NUMBER OF GENES
singleton Cys-rich, GRP, PRP, PTM, unknown 1230
Family_01 PRP, PTM, unknown 71
Family_02 unknown 69
Family_03 Cys-rich 64
Family_04 unknown 54
Family_05 unknown 38
Family_06 Cys-rich 38
Family_07 Cys-rich 34
Family_08 GRP, PRP, unknown 32
Family_09 Cys-rich 27
Family_10 PTM, unknown 25
Family_11 Cys-rich 21
Family_13 PTM, unknown 18
Family_12 unknown 18
Family_14 Cys-rich 16
Family_15 Cys-rich 15
Family_16 unknown 14
Family_17 Cys-rich 13
Family_20 Cys-rich 12
Family_19 unknown 11
Family_21 PTM, unknown 10
Family_22 unknown 10
Family_23 Cys-rich, unknown 10
Family_24 unknown 10
Family_25 Cys-rich 10
Family_26 Cys-rich 9
Family_27 Cys-rich 9
Family_28 Cys-rich 9
Family_31 unknown 8
Family_30 PTM, unknown 8
Family_29 unknown 8
Family_33 unknown 7
Family_32 unknown 7
Family_34 unknown 7
Family_35 unknown 7
Family_18 unknown 7
Family_36 GRP, PTM, unknown 6
Family_37 GRP, unknown 6
Family_38 PTM, unknown 6
Family_39 Cys-rich 6
Family_40 Cys-rich 6
Family_49 PTM, unknown 5
Family_47 Cys-rich 5
Family_46 unknown 5
Family_45 unknown 5
Family_44 unknown 5
Family_43 unknown 5
Family_41 Cys-rich 5
Family_42 unknown 5
Family_50 unknown 5
Family_51 PTM 5
Family_52 Cys-rich 5
Family_48 Cys-rich 5
Family_59 Cys-rich 5
Family_58 unknown 5
Family_57 PTM, unknown 5
Family_56 unknown 5
Family_55 Cys-rich 5
Family_54 Cys-rich 5
Family_53 unknown 5
Family_65 PTM 4
Family_64 unknown 4
Family_63 Cys-rich 4
Family_62 unknown 4
Family_61 unknown 4
Family_60 PTM 4
Family_66 PTM, unknown 4
Family_67 unknown 4
Family_68 Cys-rich 4
Family_69 unknown 4
Family_70 PTM, unknown 4
Family_72 PTM, unknown 4
Family_73 Cys-rich 4
Family_74 Cys-rich 4
Family_76 unknown 3
Family_77 Cys-rich 3
Family_78 unknown 3
Family_79 PTM 3
Family_80 unknown 3
Family_81 unknown 3
Family_82 unknown 3
Family_75 unknown 3
Family_107 unknown 3
Family_106 Cys-rich 3
Family_105 unknown 3
Family_104 Cys-rich 3
Family_103 Cys-rich 3
Family_102 Cys-rich 3
Family_101 Cys-rich 3
Family_100 unknown 3
Family_84 unknown 3
Family_85 unknown 3
Family_99 Cys-rich 3
Family_98 Cys-rich 3
Family_97 Cys-rich 3
Family_96 Cys-rich 3
Family_95 Cys-rich 3
Family_94 GRP 3
Family_92 unknown 3
Family_93 unknown 3
Family_91 Cys-rich 3
Family_90 unknown 3
Family_89 PTM, unknown 3
Family_88 unknown 3
Family_87 unknown 3
Family_86 unknown 3
Family_192 unknown 2
Family_83 unknown 2
Family_136 unknown 2
Family_163 unknown 2
Family_149 unknown 2
Family_148 unknown 2
Family_147 unknown 2
Family_146 unknown 2
Family_145 PTM 2
Family_144 unknown 2
Family_143 unknown 2
Family_142 unknown 2
Family_141 Cys-rich 2
Family_140 unknown 2
Family_139 Cys-rich 2
Family_150 unknown 2
Family_151 unknown 2
Family_162 unknown 2
Family_161 PTM 2
Family_160 Cys-rich 2
Family_159 Cys-rich 2
Family_158 Cys-rich 2
Family_157 unknown 2
Family_156 unknown 2
Family_155 unknown 2
Family_154 GRP 2
Family_153 unknown 2
Family_152 unknown 2
Family_138 unknown 2
Family_137 unknown 2
Family_135 Cys-rich 2
Family_120 PTM, unknown 2
Family_119 PTM 2
Family_118 unknown 2
Family_117 Cys-rich 2
Family_116 Cys-rich 2
Family_115 Cys-rich 2
Family_114 unknown 2
Family_113 unknown 2
Family_111 unknown 2
Family_110 unknown 2
Family_109 unknown 2
Family_121 unknown 2
Family_122 unknown 2
Family_134 unknown 2
Family_133 PTM 2
Family_132 unknown 2
Family_131 unknown 2
Family_130 unknown 2
Family_129 unknown 2
Family_128 unknown 2
Family_127 Cys-rich 2
Family_126 unknown 2
Family_124 Cys-rich 2
Family_123 Cys-rich 2
Family_108 PTM, unknown 2
Family_218 unknown 2
Family_204 unknown 2
Family_203 Cys-rich 2
Family_202 unknown 2
Family_201 unknown 2
Family_200 unknown 2
Family_199 unknown 2
Family_198 PTM, unknown 2
Family_197 unknown 2
Family_196 unknown 2
Family_195 Cys-rich 2
Family_194 PRP 2
Family_205 PTM 2
Family_206 unknown 2
Family_217 unknown 2
Family_216 unknown 2
Family_215 unknown 2
Family_214 Cys-rich 2
Family_213 unknown 2
Family_212 unknown 2
Family_211 unknown 2
Family_210 unknown 2
Family_209 unknown 2
Family_208 Cys-rich 2
Family_207 Cys-rich 2
Family_193 unknown 2
Family_191 unknown 2
Family_190 unknown 2
Family_175 unknown 2
Family_174 PRP 2
Family_173 Cys-rich 2
Family_172 unknown 2
Family_171 unknown 2
Family_170 PTM, unknown 2
Family_169 Cys-rich 2
Family_168 unknown 2
Family_167 unknown 2
Family_166 PTM, unknown 2
Family_165 PTM 2
Family_176 unknown 2
Family_177 unknown 2
Family_189 unknown 2
Family_188 unknown 2
Family_187 unknown 2
Family_186 Cys-rich 2
Family_185 unknown 2
Family_184 Cys-rich 2
Family_182 unknown 2
Family_181 unknown 2
Family_180 unknown 2
Family_179 unknown 2
Family_178 unknown 2
Family_164 Cys-rich 2