HMM PROFILE


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DETAILS OF PUTATIVE SSP GENE FAMILIES


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Gene Assembly Chromosome Coordinates SSP Type SSP Family SignalP D-value Protein Length Annotation Orthologs Pfam ID Pfam name Homology info
Medtr1g041725 Mt4.0v1 chr1 15670969-15671157 putative SSP Family_02 0.630 62 transmembrane protein, putative conf_class=LC
Medtr1g085650 Mt4.0v1 chr1 38274069-38274475 putative SSP Family_02 0.607 61 transmembrane protein, putative conf_class=HC
Medtr2g031500 Mt4.0v1 chr2 11828497-11831478 putative SSP Family_02 0.506 123 hypothetical protein conf_class=LC non-IRLC
Medtr2g088740 Mt4.0v1 chr2 37443776-37445035 putative SSP Family_02 0.880 187 hypothetical protein conf_class=LC Basal; Dicot; IRLC; Monocot; non-IRLC
Medtr3g069400 Mt4.0v1 chr3 31049666-31050935 putative SSP Family_02 0.457 88 transmembrane protein, putative conf_class=HC
Medtr4g028380 Mt4.0v1 chr4 9812978-9814875 putative SSP Family_02 0.621 197 hypothetical protein conf_class=LC Dicot; IRLC
Medtr4g122170 Mt4.0v1 chr4 50449312-50452135 putative SSP Family_02 0.525 176 hypothetical protein conf_class=LC IRLC
Medtr5g041190 Mt4.0v1 chr5 18089455-18090319 putative SSP Family_02 0.452 214 hypothetical protein conf_class=HC IRLC; Monocot
Medtr5g048020 Mt4.0v1 chr5 21016626-21017280 putative SSP Family_02 0.473 174 hypothetical protein conf_class=LC Dicot; IRLC; non-IRLC
Medtr7g105480 Mt4.0v1 chr7 42776468-42777353 putative SSP Family_02 0.487 96 transmembrane protein, putative conf_class=HC
MT35Noble_021419 Mt3.5v5 chr4 37812899-37813141 putative SSP Family_02 0.530 80 Putative non-LTR retroelement reverse transcriptase, related
MT35Noble_021475 Mt3.5v5 chr4 38019217-38019459 putative SSP Family_02 0.530 80 Putative non-LTR retroelement reverse transcriptase, related
MT35Noble_064368 Mt3.5v5 contig_101104 1627-1869 putative SSP Family_02 0.612 80 Putative non-LTR retroelement reverse transcriptase, related non-IRLC
MT35v5_contig_100506_36 Mt3.5v5 contig_100506 207-566 putative SSP Family_02 0.485 120 Unknown protein conf_class=H Monocot; non-IRLC TPDL
MT35v5_contig_105637_51 Mt3.5v5 contig_105637 771-1016 putative SSP Family_02 0.575 82 Unknown protein conf_class=H IRLC
MT35v5_contig_106019_16 Mt3.5v5 contig_106019 356-535 putative SSP Family_02 0.568 60 Unknown protein conf_class=H
MT35v5_contig_108609_54 Mt3.5v5 contig_108609 352-579 putative SSP Family_02 0.606 76 Unknown protein conf_class=H
MT35v5_contig_116345_13 Mt3.5v5 contig_116345 259-516 putative SSP Family_02 0.711 86 Unknown protein conf_class=H
MT35v5_contig_121041_33 Mt3.5v5 contig_121041 251-496 putative SSP Family_02 0.714 82 Unknown protein conf_class=H
MT35v5_contig_12353_62 Mt3.5v5 contig_12353 1553-1936 putative SSP Family_02 0.615 128 Unknown protein conf_class=H
MT35v5_contig_130890_23 Mt3.5v5 contig_130890 552-812 putative SSP Family_02 0.482 87 Unknown protein conf_class=H
MT35v5_contig_178833_50 Mt3.5v5 contig_178833 198-428 putative SSP Family_02 0.537 77 Unknown protein conf_class=H
MT35v5_contig_179281_20 Mt3.5v5 contig_179281 404-730 putative SSP Family_02 0.635 109 Unknown protein conf_class=H
MT35v5_contig_18425_10 Mt3.5v5 contig_18425 64-420 putative SSP Family_02 0.669 119 Unknown protein conf_class=H IRLC
MT35v5_contig_184802_43 Mt3.5v5 contig_184802 592-981 putative SSP Family_02 0.626 130 Unknown protein conf_class=H Dicot; IRLC
MT35v5_contig_22063_21 Mt3.5v5 contig_22063 440-907 putative SSP Family_02 0.500 156 Unknown protein conf_class=H non-IRLC PF13966 zinc-binding in reverse transcriptase
MT35v5_contig_242804_54 Mt3.5v5 contig_242804 379-651 putative SSP Family_02 0.468 91 Unknown protein conf_class=H IRLC
MT35v5_contig_253847_24 Mt3.5v5 contig_253847 308-580 putative SSP Family_02 0.465 91 Unknown protein conf_class=H
MT35v5_contig_77884_24 Mt3.5v5 contig_77884 581-982 putative SSP Family_02 0.673 134 Unknown protein conf_class=H
MT35v5_contig_84866_2 Mt3.5v5 contig_84866 1907-2104 putative SSP Family_02 0.622 65 Unknown protein conf_class=H
MT35v5_contig_87555_22 Mt3.5v5 contig_87555 307-768 putative SSP Family_02 0.804 154 Glutamate-gated kainate-type ion channel receptor subunit GluR5 conf_class=H Basal; Dicot; IRLC; Monocot; non-IRLC
MT35v5_contig_87711_18 Mt3.5v5 contig_87711 475-864 putative SSP Family_02 0.495 130 Cyst nematode resistance protein-like protein conf_class=H
MT35v5_contig_9218_1 Mt3.5v5 contig_9218 44-1712 putative SSP Family_02 0.493 132 Unknown protein conf_class=I
MT35v5_contig_93936_16 Mt3.5v5 contig_93936 353-607 putative SSP Family_02 0.582 85 Unknown protein conf_class=H
MT35v5_contig_97581_13 Mt3.5v5 contig_97581 293-526 putative SSP Family_02 0.524 78 Unknown protein conf_class=H
MT35v5_Medtr1g021090 Mt3.5v5 chr1 6381220-6381523 putative SSP Family_02 0.654 81 hypothetical protein conf_class=H
MT35v5_Medtr1g075020 Mt3.5v5 chr1 18905503-18905913 putative SSP Family_02 0.558 136 hypothetical protein conf_class=H IRLC; Monocot; non-IRLC
MT35v5_Medtr2g025600 Mt3.5v5 chr2 7936247-7937948 putative SSP Family_02 0.626 80 hypothetical protein conf_class=H
MT35v5_Medtr2g026770 Mt3.5v5 chr2 8618463-8618702 putative SSP Family_02 0.767 79 hypothetical protein conf_class=H
MT35v5_Medtr2g086570 Mt3.5v5 chr2 26611584-26611787 putative SSP Family_02 0.655 67 hypothetical protein conf_class=H
MT35v5_Medtr2g087990 Mt3.5v5 chr2 27317898-27318101 putative SSP Family_02 0.602 67 hypothetical protein conf_class=H
MT35v5_Medtr3g007500 Mt3.5v5 chr3 1078741-1079085 putative SSP Family_02 0.459 114 hypothetical protein conf_class=H IRLC; non-IRLC
MT35v5_Medtr3g029600 Mt3.5v5 chr3 8753504-8753801 putative SSP Family_02 0.749 76 hypothetical protein conf_class=H
MT35v5_Medtr3g084970 Mt3.5v5 chr3 27670950-27671192 putative SSP Family_02 0.533 80 hypothetical protein conf_class=H
MT35v5_Medtr4g092810 Mt3.5v5 chr4 31878721-31879083 putative SSP Family_02 0.574 120 hypothetical protein conf_class=H Monocot; non-IRLC
MT35v5_Medtr4g131420 Mt3.5v5 chr4 46279157-46279399 putative SSP Family_02 0.687 80 hypothetical protein conf_class=H IRLC; non-IRLC
MT35v5_Medtr5g019690 Mt3.5v5 chr5 7207906-7208139 putative SSP Family_02 0.721 77 hypothetical protein conf_class=H
MT35v5_Medtr5g021950 Mt3.5v5 chr5 8314428-8314667 putative SSP Family_02 0.553 79 hypothetical protein conf_class=H
MT35v5_Medtr5g069540 Mt3.5v5 chr5 28497737-28501070 putative SSP Family_02 0.628 91 hypothetical protein conf_class=H
MT35v5_Medtr7g070680 Mt3.5v5 chr7 18360024-18360194 putative SSP Family_02 0.679 56 hypothetical protein conf_class=H
MT35v5_Medtr7g098620 Mt3.5v5 chr7 30660623-30661424 putative SSP Family_02 0.519 103 hypothetical protein conf_class=H
MT35v5_Medtr8g022350 Mt3.5v5 chr8 5594530-5595309 putative SSP Family_02 0.455 90 hypothetical protein conf_class=L
MT35v5_Medtr8g043950 Mt3.5v5 chr8 11204709-11205391 putative SSP Family_02 0.622 87 hypothetical protein conf_class=L
MT35v5_Medtr8g105000 Mt3.5v5 chr8 31092678-31092986 putative SSP Family_02 0.476 102 hypothetical protein conf_class=I IRLC
MT4Noble_000646 Mt4.0v1 chr1 4534956-4535240 putative SSP Family_02 0.796 94 Transmembrane protein, putative
MT4Noble_009911 Mt4.0v1 chr2 15266211-15266417 putative SSP Family_02 0.462 68 H+-transporting two-sector ATPase, alpha/beta subunit, central region, related
MT4Noble_014280 Mt4.0v1 chr3 963493-963720 putative SSP Family_02 0.697 75 Transmembrane protein, putative
MT4Noble_016114 Mt4.0v1 chr3 14853493-14853720 putative SSP Family_02 0.648 75 Transmembrane protein, putative IRLC
MT4Noble_025375 Mt4.0v1 chr4 25056811-25056969 putative SSP Family_02 0.507 52 Transmembrane protein, putative
MT4Noble_034839 Mt4.0v1 chr5 32108385-32108516 putative SSP Family_02 0.516 43 Cytochrome P450 IRLC
MT4Noble_035277 Mt4.0v1 chr5 35077346-35077582 putative SSP Family_02 0.594 78 Putative non-LTR retroelement reverse transcriptase, related non-IRLC
MT4Noble_036432 Mt4.0v1 chr5 41913318-41913560 putative SSP Family_02 0.549 80 Putative non-LTR retroelement reverse transcriptase, related IRLC
MT4Noble_037089 Mt4.0v1 chr6 2683759-2684001 putative SSP Family_02 0.504 80 Putative non-LTR retroelement reverse transcriptase, related
MT4Noble_038398 Mt4.0v1 chr6 11779880-11780188 putative SSP Family_02 0.659 102 Transmembrane protein, putative IRLC
MT4Noble_049797 Mt4.0v1 chr8 10801941-10802222 putative SSP Family_02 0.567 93 Putative non-LTR retroelement reverse transcriptase, related
MT4Noble_051631 Mt4.0v1 chr8 25582723-25583043 putative SSP Family_02 0.931 106 Cytochrome P450 IRLC
MT4Noble_051682 Mt4.0v1 chr8 25890645-25890938 putative SSP Family_02 0.649 97 Transmembrane protein, putative
MT4Noble_053486 Mt4.0v1 chr8 37322144-37322371 putative SSP Family_02 0.706 75 Transmembrane protein, putative
MT4Noble_055560 Mt4.0v1 scaffold0047 64268-64498 putative SSP Family_02 0.665 76 H+-transporting two-sector ATPase, alpha/beta subunit, central region