• Gene Family Details



HMM PROFILE


Download HMM profile file Download fasta file

DETAILS OF PUTATIVE SSP GENE FAMILIES


Download gene ID list

Gene Assembly Chromosome Coordinates SSP Type SSP Family SignalP D-value Protein Length Annotation Orthologs Pfam ID Pfam name Homology info
Medtr1g041725 Mt4.0v1 chr1 15670969-15671157 putative SSP Family_02 0.630 62 transmembrane protein, putative conf_class=LC
Medtr1g085650 Mt4.0v1 chr1 38274069-38274475 putative SSP Family_02 0.607 61 transmembrane protein, putative conf_class=HC
Medtr2g031500 Mt4.0v1 chr2 11828497-11831478 putative SSP Family_02 0.506 123 hypothetical protein conf_class=LC non-IRLC
Medtr2g088740 Mt4.0v1 chr2 37443776-37445035 putative SSP Family_02 0.880 187 hypothetical protein conf_class=LC Basal; Dicot; IRLC; Monocot; non-IRLC
Medtr3g069400 Mt4.0v1 chr3 31049666-31050935 putative SSP Family_02 0.457 88 transmembrane protein, putative conf_class=HC
Medtr4g028380 Mt4.0v1 chr4 9812978-9814875 putative SSP Family_02 0.621 197 hypothetical protein conf_class=LC Dicot; IRLC
Medtr4g122170 Mt4.0v1 chr4 50449312-50452135 putative SSP Family_02 0.525 176 hypothetical protein conf_class=LC IRLC
Medtr5g041190 Mt4.0v1 chr5 18089455-18090319 putative SSP Family_02 0.452 214 hypothetical protein conf_class=HC IRLC; Monocot
Medtr5g048020 Mt4.0v1 chr5 21016626-21017280 putative SSP Family_02 0.473 174 hypothetical protein conf_class=LC Dicot; IRLC; non-IRLC
Medtr7g105480 Mt4.0v1 chr7 42776468-42777353 putative SSP Family_02 0.487 96 transmembrane protein, putative conf_class=HC
MT35Noble_021419 Mt3.5v5 chr4 37812899-37813141 putative SSP Family_02 0.530 80 Putative non-LTR retroelement reverse transcriptase, related
MT35Noble_021475 Mt3.5v5 chr4 38019217-38019459 putative SSP Family_02 0.530 80 Putative non-LTR retroelement reverse transcriptase, related
MT35Noble_064368 Mt3.5v5 contig_101104 1627-1869 putative SSP Family_02 0.612 80 Putative non-LTR retroelement reverse transcriptase, related non-IRLC
MT35v5_contig_100506_36 Mt3.5v5 contig_100506 207-566 putative SSP Family_02 0.485 120 Unknown protein conf_class=H Monocot; non-IRLC TPDL
MT35v5_contig_105637_51 Mt3.5v5 contig_105637 771-1016 putative SSP Family_02 0.575 82 Unknown protein conf_class=H IRLC
MT35v5_contig_106019_16 Mt3.5v5 contig_106019 356-535 putative SSP Family_02 0.568 60 Unknown protein conf_class=H
MT35v5_contig_108609_54 Mt3.5v5 contig_108609 352-579 putative SSP Family_02 0.606 76 Unknown protein conf_class=H
MT35v5_contig_116345_13 Mt3.5v5 contig_116345 259-516 putative SSP Family_02 0.711 86 Unknown protein conf_class=H
MT35v5_contig_121041_33 Mt3.5v5 contig_121041 251-496 putative SSP Family_02 0.714 82 Unknown protein conf_class=H
MT35v5_contig_12353_62 Mt3.5v5 contig_12353 1553-1936 putative SSP Family_02 0.615 128 Unknown protein conf_class=H
MT35v5_contig_130890_23 Mt3.5v5 contig_130890 552-812 putative SSP Family_02 0.482 87 Unknown protein conf_class=H
MT35v5_contig_178833_50 Mt3.5v5 contig_178833 198-428 putative SSP Family_02 0.537 77 Unknown protein conf_class=H
MT35v5_contig_179281_20 Mt3.5v5 contig_179281 404-730 putative SSP Family_02 0.635 109 Unknown protein conf_class=H
MT35v5_contig_18425_10 Mt3.5v5 contig_18425 64-420 putative SSP Family_02 0.669 119 Unknown protein conf_class=H IRLC
MT35v5_contig_184802_43 Mt3.5v5 contig_184802 592-981 putative SSP Family_02 0.626 130 Unknown protein conf_class=H Dicot; IRLC
MT35v5_contig_22063_21 Mt3.5v5 contig_22063 440-907 putative SSP Family_02 0.500 156 Unknown protein conf_class=H non-IRLC PF13966 zinc-binding in reverse transcriptase
MT35v5_contig_242804_54 Mt3.5v5 contig_242804 379-651 putative SSP Family_02 0.468 91 Unknown protein conf_class=H IRLC
MT35v5_contig_253847_24 Mt3.5v5 contig_253847 308-580 putative SSP Family_02 0.465 91 Unknown protein conf_class=H
MT35v5_contig_77884_24 Mt3.5v5 contig_77884 581-982 putative SSP Family_02 0.673 134 Unknown protein conf_class=H
MT35v5_contig_84866_2 Mt3.5v5 contig_84866 1907-2104 putative SSP Family_02 0.622 65 Unknown protein conf_class=H
MT35v5_contig_87555_22 Mt3.5v5 contig_87555 307-768 putative SSP Family_02 0.804 154 Glutamate-gated kainate-type ion channel receptor subunit GluR5 conf_class=H Basal; Dicot; IRLC; Monocot; non-IRLC
MT35v5_contig_87711_18 Mt3.5v5 contig_87711 475-864 putative SSP Family_02 0.495 130 Cyst nematode resistance protein-like protein conf_class=H
MT35v5_contig_9218_1 Mt3.5v5 contig_9218 44-1712 putative SSP Family_02 0.493 132 Unknown protein conf_class=I
MT35v5_contig_93936_16 Mt3.5v5 contig_93936 353-607 putative SSP Family_02 0.582 85 Unknown protein conf_class=H
MT35v5_contig_97581_13 Mt3.5v5 contig_97581 293-526 putative SSP Family_02 0.524 78 Unknown protein conf_class=H
MT35v5_Medtr1g021090 Mt3.5v5 chr1 6381220-6381523 putative SSP Family_02 0.654 81 hypothetical protein conf_class=H
MT35v5_Medtr1g075020 Mt3.5v5 chr1 18905503-18905913 putative SSP Family_02 0.558 136 hypothetical protein conf_class=H IRLC; Monocot; non-IRLC
MT35v5_Medtr2g025600 Mt3.5v5 chr2 7936247-7937948 putative SSP Family_02 0.626 80 hypothetical protein conf_class=H
MT35v5_Medtr2g026770 Mt3.5v5 chr2 8618463-8618702 putative SSP Family_02 0.767 79 hypothetical protein conf_class=H
MT35v5_Medtr2g086570 Mt3.5v5 chr2 26611584-26611787 putative SSP Family_02 0.655 67 hypothetical protein conf_class=H
MT35v5_Medtr2g087990 Mt3.5v5 chr2 27317898-27318101 putative SSP Family_02 0.602 67 hypothetical protein conf_class=H
MT35v5_Medtr3g007500 Mt3.5v5 chr3 1078741-1079085 putative SSP Family_02 0.459 114 hypothetical protein conf_class=H IRLC; non-IRLC
MT35v5_Medtr3g029600 Mt3.5v5 chr3 8753504-8753801 putative SSP Family_02 0.749 76 hypothetical protein conf_class=H
MT35v5_Medtr3g084970 Mt3.5v5 chr3 27670950-27671192 putative SSP Family_02 0.533 80 hypothetical protein conf_class=H
MT35v5_Medtr4g092810 Mt3.5v5 chr4 31878721-31879083 putative SSP Family_02 0.574 120 hypothetical protein conf_class=H Monocot; non-IRLC
MT35v5_Medtr4g131420 Mt3.5v5 chr4 46279157-46279399 putative SSP Family_02 0.687 80 hypothetical protein conf_class=H IRLC; non-IRLC
MT35v5_Medtr5g019690 Mt3.5v5 chr5 7207906-7208139 putative SSP Family_02 0.721 77 hypothetical protein conf_class=H
MT35v5_Medtr5g021950 Mt3.5v5 chr5 8314428-8314667 putative SSP Family_02 0.553 79 hypothetical protein conf_class=H
MT35v5_Medtr5g069540 Mt3.5v5 chr5 28497737-28501070 putative SSP Family_02 0.628 91 hypothetical protein conf_class=H
MT35v5_Medtr7g070680 Mt3.5v5 chr7 18360024-18360194 putative SSP Family_02 0.679 56 hypothetical protein conf_class=H
MT35v5_Medtr7g098620 Mt3.5v5 chr7 30660623-30661424 putative SSP Family_02 0.519 103 hypothetical protein conf_class=H
MT35v5_Medtr8g022350 Mt3.5v5 chr8 5594530-5595309 putative SSP Family_02 0.455 90 hypothetical protein conf_class=L
MT35v5_Medtr8g043950 Mt3.5v5 chr8 11204709-11205391 putative SSP Family_02 0.622 87 hypothetical protein conf_class=L
MT35v5_Medtr8g105000 Mt3.5v5 chr8 31092678-31092986 putative SSP Family_02 0.476 102 hypothetical protein conf_class=I IRLC
MT4Noble_000646 Mt4.0v1 chr1 4534956-4535240 putative SSP Family_02 0.796 94 Transmembrane protein, putative
MT4Noble_009911 Mt4.0v1 chr2 15266211-15266417 putative SSP Family_02 0.462 68 H+-transporting two-sector ATPase, alpha/beta subunit, central region, related
MT4Noble_014280 Mt4.0v1 chr3 963493-963720 putative SSP Family_02 0.697 75 Transmembrane protein, putative
MT4Noble_016114 Mt4.0v1 chr3 14853493-14853720 putative SSP Family_02 0.648 75 Transmembrane protein, putative IRLC
MT4Noble_025375 Mt4.0v1 chr4 25056811-25056969 putative SSP Family_02 0.507 52 Transmembrane protein, putative
MT4Noble_034839 Mt4.0v1 chr5 32108385-32108516 putative SSP Family_02 0.516 43 Cytochrome P450 IRLC
MT4Noble_035277 Mt4.0v1 chr5 35077346-35077582 putative SSP Family_02 0.594 78 Putative non-LTR retroelement reverse transcriptase, related non-IRLC
MT4Noble_036432 Mt4.0v1 chr5 41913318-41913560 putative SSP Family_02 0.549 80 Putative non-LTR retroelement reverse transcriptase, related IRLC
MT4Noble_037089 Mt4.0v1 chr6 2683759-2684001 putative SSP Family_02 0.504 80 Putative non-LTR retroelement reverse transcriptase, related
MT4Noble_038398 Mt4.0v1 chr6 11779880-11780188 putative SSP Family_02 0.659 102 Transmembrane protein, putative IRLC
MT4Noble_049797 Mt4.0v1 chr8 10801941-10802222 putative SSP Family_02 0.567 93 Putative non-LTR retroelement reverse transcriptase, related
MT4Noble_051631 Mt4.0v1 chr8 25582723-25583043 putative SSP Family_02 0.931 106 Cytochrome P450 IRLC
MT4Noble_051682 Mt4.0v1 chr8 25890645-25890938 putative SSP Family_02 0.649 97 Transmembrane protein, putative
MT4Noble_053486 Mt4.0v1 chr8 37322144-37322371 putative SSP Family_02 0.706 75 Transmembrane protein, putative
MT4Noble_055560 Mt4.0v1 scaffold0047 64268-64498 putative SSP Family_02 0.665 76 H+-transporting two-sector ATPase, alpha/beta subunit, central region