MtSSPdb - Medicago truncatula SSP Database
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Download Data

Here you can download different datasets, including all 70,094 M. truncatula Noble re-annotated genes and 4,439 Small Secreted Peptides.


FASTA Sequences

Medicago truncatula re-annotation based on Mt4.0 and Mt3.5 genome, spliced transcript
Medicago truncatula re-annotation based on Mt4.0 and Mt3.5 genome, protein sequence
Small Peptides Medicago truncatula re-annotation based on Mt4.0 and Mt3.5 genome, spliced transcript
Small Peptides Medicago truncatula re-annotation based on Mt4.0 and Mt3.5 genome, protein sequence

GFF files

Medicago truncatula gff file based on Mt4.0 re-annotated genome
Medicago truncatula gff file based on Mt3.5. v5 re-annotated genome

GO and KEGG annotation Data

Medicago truncatula Gene Ontology Annotation Dataset
Medicago truncatula KEGG Annotation Dataset

HMM profiles

Hidden Markov Model (HMM) profiles in Medicago truncatula based on 37 SSP families

Homology files used for SSP prediction in plants

Plant SSP genes fasta file based on 3,415 SSPs from 35 plant species
Hidden Markov Model (HMM) profiles in 6 plant species based on 4,818 SSP families

MtrunA17r5.0-ANR genes mapped on the Noble reannotated genome

MtrunA17r5.0-ANR gene IDs mapped on the Noble reannotated genome



Last update: December 2019.

   

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