• Gene Family Details



FAMILY INFORMATION


Family name S-Locus Cysteine Rich-Like (SCRL)
Class Cys-rich
Mode of Action Signal
Post-translational modifications (PTMs) 8 Cysteines
Receptor SRK
Evolutionary Range -
Function The founding member SCR/SP11 is the pollen determinant in self-incompatibility, binding to the S-Locus RK on the pistil; the functions of the other SCRLs expressed outside of the pollen are unknown
References
  • The male determinant of self-incompatibility in Brassica The male determinant of self-incompatibility in Brassica Science . 1999 Nov 26;286(5445):1697-700.
  • Two large Arabidopsis thaliana gene families are homologous to the Brassica gene superfamily that encodes pollen coat proteins and the male component of the self-incompatibility response Two large Arabidopsis thaliana gene families are homologous to the Brassica gene superfamily that encodes pollen coat proteins and the male component of the self-incompatibility response Plant Mol Biol . 2001 May;46(1):17-34.

HMM PROFILE


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GENE MEMBERS DETAILS


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Gene Assembly Chromossome Coordinates SSP Type SSP Family member SignalP D-value Protein Length Annotation
Medtr3g045560 Mt4.0v1 chr3 14869637-14870653 known SSP SCRL11 0.833 85 SCR related conf_class=HC
Medtr6g014345 Mt4.0v1 chr6 4647964-4648450 known SSP SCRL6 0.754 109 SCR related conf_class=HC
Medtr6g014365 Mt4.0v1 chr6 4654994-4655215 known SSP SCRL15 0.101 73 hypothetical protein conf_class=LC
Medtr6g016220 Mt4.0v1 chr6 5915251-5915505 known SSP SCRL13 0.107 84 SCR related conf_class=HC
Medtr6g016235 Mt4.0v1 chr6 5923535-5924621 known SSP SCRL3 0.753 119 SCR related conf_class=HC
Medtr6g025710 Mt4.0v1 chr6 8940695-8941191 known SSP SCRL7 0.864 105 SCR related conf_class=HC
Medtr6g025800 Mt4.0v1 chr6 8975610-8976131 known SSP SCRL8 0.910 117 SCR related conf_class=HC
Medtr6g026710 Mt4.0v1 chr6 9016273-9016443 known SSP SCRL16 0.122 56 hypothetical protein conf_class=LC
Medtr7g017980 Mt4.0v1 chr7 5773740-5774244 known SSP SCRL1 0.899 95 SCR conf_class=HC
Medtr7g018000 Mt4.0v1 chr7 5783722-5784190 known SSP SCRL2 0.935 88 SCR conf_class=HC
Medtr7g018020 Mt4.0v1 chr7 5787802-5788170 known SSP SCRL9 0.804 89 SCR related conf_class=HC
Medtr7g018030 Mt4.0v1 chr7 5791773-5792199 known SSP SCRL10 0.825 88 SCR related conf_class=HC
Medtr7g021160 Mt4.0v1 chr7 6647099-6647835 known SSP SCRL12 0.775 100 Chitinase conf_class=HC
Medtr7g417710 Mt4.0v1 chr7 5674430-5674951 known SSP SCRL4 0.861 108 SCR related conf_class=HC
Medtr7g417780 Mt4.0v1 chr7 5699482-5700003 known SSP SCRL5 0.861 108 SCR related conf_class=HC
MT35v5_Medtr8g072070 Mt3.5v5 chr8 18818383-18818900 known SSP SCRL14 0.112 76 SCR-like protein conf_class=L
MT4Noble_041972 Mt4.0v1 chr7 5783740-5784017 known SSP SCRL17 0.918 71 SCR