• Gene Family Details



FAMILY INFORMATION


Family name Nodule-specific Glycine-rich Protein (NodGRP)
Class Non-Cys, non-PTM
Mode of Action Unknown
Post-translational modifications (PTMs) -
Receptor -
Evolutionary Range IRLC Legume specific
Function Nodulation. Evidence suggests a role in bacterial infection but not differentiation; could serve as antimicrobials or signaling
References
  • Glycine-rich proteins encoded by a nodule-specific gene family are implicated in different stages of symbiotic nodule development in Medicago spp Glycine-rich proteins encoded by a nodule-specific gene family are implicated in different stages of symbiotic nodule development in Medicago spp Mol Plant Microbe Interact . 2002 Sep;15(9):922-31.

HMM PROFILE


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GENE MEMBERS DETAILS


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Gene Assembly Chromossome Coordinates SSP Type SSP Family member SignalP D-value Protein Length Annotation
Medtr0174s0090 Mt4.0v1 scaffold0174 31624-32463 known SSP NodGRP4 0.896 140 Nodule-specific Glycine Rich Peptide conf_class=HC
Medtr1g023910 Mt4.0v1 chr1 7700452-7702012 known SSP NodGRP5 0.106 277 hypothetical protein conf_class=LC
Medtr1g033630 Mt4.0v1 chr1 12145669-12146336 known SSP NodGRP6 0.918 109 hypothetical protein conf_class=HC
Medtr1g110880 Mt4.0v1 chr1 50063075-50063607 known SSP NodGRP7 0.107 88 hypothetical protein conf_class=HC
Medtr1g111850 Mt4.0v1 chr1 50575002-50575652 known SSP NodGRP8 0.843 77 Nodule-specific Glycine Rich Peptide conf_class=HC
Medtr2g039235 Mt4.0v1 chr2 17184446-17184754 known SSP NodGRP9 0.103 102 Nodule-specific Glycine Rich Peptide conf_class=HC
Medtr2g039280 Mt4.0v1 chr2 17210759-17211486 known SSP NodGRP3A 0.700 116 Nodule-specific Glycine Rich Peptide conf_class=HC
Medtr2g041100 Mt4.0v1 chr2 18014868-18015502 known SSP NodGRP10 0.902 123 Nodule-specific Glycine Rich Peptide conf_class=HC
Medtr2g042470 Mt4.0v1 chr2 18538399-18539152 known SSP NodGRP11 0.682 99 Nodule-specific Glycine Rich Peptide MtNodGRP2D conf_class=HC
Medtr2g042480 Mt4.0v1 chr2 18541880-18542689 known SSP NodGRP2A 0.676 109 Nodule-specific Glycine Rich Peptide MtNodGRP2A conf_class=HC
Medtr2g042510 Mt4.0v1 chr2 18549113-18550731 known SSP NodGRP2B 0.875 117 Nodule-specific Glycine Rich Peptide MtNodGRP2B conf_class=HC
Medtr2g042520 Mt4.0v1 chr2 18555006-18555523 known SSP NodGRP2C 0.722 136 Nodule-specific Glycine Rich Peptide MtNodGRP2C conf_class=HC
Medtr2g043880 Mt4.0v1 chr2 19064765-19065779 known SSP NodGRP12 0.726 95 Nodule-specific Glycine Rich Peptide conf_class=HC
Medtr2g044720 Mt4.0v1 chr2 19425731-19426039 known SSP NodGRP13 0.103 75 Nodule-specific Glycine Rich Peptide conf_class=HC
Medtr2g044740 Mt4.0v1 chr2 19443387-19443755 known SSP NodGRP14 0.725 95 Nodule-specific Glycine Rich Peptide conf_class=HC
Medtr2g069245 Mt4.0v1 chr2 28752880-28753536 known SSP NodGRP15 0.758 123 Nodule-specific Glycine Rich Peptide conf_class=HC
Medtr2g069273 Mt4.0v1 chr2 28762421-28764030 known SSP NodGRP3C 0.930 226 Nodule-specific Glycine Rich Peptide conf_class=HC
Medtr2g069283 Mt4.0v1 chr2 28768022-28768931 known SSP NodGRP3B 0.930 134 Nodule-specific Glycine Rich Peptide conf_class=HC
Medtr2g081540 Mt4.0v1 chr2 34222387-34222743 known SSP NodGRP16 0.101 118 hypothetical protein conf_class=LC
Medtr2g439230 Mt4.0v1 chr2 17169319-17169632 known SSP NodGRP17 0.793 50 Nodule-specific Glycine Rich Peptide conf_class=HC
Medtr2g439250 Mt4.0v1 chr2 17173382-17174443 known SSP NodGRP18 0.117 51 hypothetical protein conf_class=HC
Medtr3g050835 Mt4.0v1 chr3 20023535-20023702 known SSP NodGRP19 0.547 55 Nodule-specific Glycine Rich Peptide conf_class=HC
Medtr3g435580 Mt4.0v1 chr3 11682018-11684483 known SSP NodGRP20 0.106 235 DUF3223 family protein conf_class=HC
Medtr3g460850 Mt4.0v1 chr3 23955927-23956670 known SSP NodGRP21 0.777 146 Nodule-specific Glycine Rich Peptide conf_class=HC
Medtr4g007620 Mt4.0v1 chr4 1159986-1160672 known SSP NodGRP22 0.827 168 Novel GRP family conf_class=HC
Medtr4g066070 Mt4.0v1 chr4 24894461-24896462 known SSP NodGRP23 0.890 139 Nodule-specific Glycine Rich Peptide conf_class=HC
Medtr4g094988 Mt4.0v1 chr4 39441563-39447669 known SSP NodGRP24 0.102 319 chromatin-binding protein conf_class=HC
Medtr5g017980 Mt4.0v1 chr5 6673878-6676087 known SSP NodGRP25 0.116 326 myb-like DNA-binding domain, shaqkyf class protein conf_class=HC
Medtr5g032465 Mt4.0v1 chr5 13939357-13940092 known SSP NodGRP26 0.717 115 Nodule-specific Glycine Rich Peptide conf_class=HC
Medtr5g032480 Mt4.0v1 chr5 13945016-13945615 known SSP NodGRP27 0.910 108 Nodule-specific Glycine Rich Peptide conf_class=HC
Medtr5g032490 Mt4.0v1 chr5 13946658-13947001 known SSP NodGRP28 0.103 85 Nodule-specific Glycine Rich Peptide conf_class=HC
Medtr5g069890 Mt4.0v1 chr5 29627002-29628361 known SSP NodGRP1D 0.870 152 Nodule-specific Glycine Rich Peptide conf_class=HC
Medtr5g081590 Mt4.0v1 chr5 34948016-34949172 known SSP NodGRP29 0.922 254 Nodule-specific Glycine Rich Peptide conf_class=HC
Medtr5g084000 Mt4.0v1 chr5 36253216-36254147 known SSP NodGRP30 0.894 134 Nodule-specific Glycine Rich Peptide conf_class=HC
Medtr5g084020 Mt4.0v1 chr5 36260582-36261292 known SSP NodGRP31 0.765 164 Nodule-specific Glycine Rich Peptide conf_class=HC
Medtr5g084040 Mt4.0v1 chr5 36271841-36272792 known SSP NodGRP32 0.901 214 Nodule-specific Glycine Rich Peptide conf_class=HC
Medtr5g084080 Mt4.0v1 chr5 36287182-36287822 known SSP NodGRP33 0.907 131 Nodule-specific Glycine Rich Peptide conf_class=HC
Medtr5g084100 Mt4.0v1 chr5 36305271-36307912 known SSP NodGRP34 0.105 189 Nodule-specific Glycine Rich Peptide MtNodGRP1F conf_class=HC
Medtr5g084105 Mt4.0v1 chr5 36308326-36309754 known SSP NodGRP1C 0.898 113 Nodule-specific Glycine Rich Peptide MtNodGRP1G conf_class=HC
Medtr5g084133 Mt4.0v1 chr5 36327325-36328035 known SSP NodGRP35 0.837 134 Nodule-specific Glycine Rich Peptide MtNodGRP1E conf_class=HC
Medtr5g084140 Mt4.0v1 chr5 36322586-36324338 known SSP NodGRP1A 0.902 175 Nodule-specific Glycine Rich Peptide MtNodGRP1A conf_class=HC
Medtr5g084160 Mt4.0v1 chr5 36336550-36338240 known SSP NodGRP36 0.875 106 Nodule-specific Glycine Rich Peptide MtNodGRP1D conf_class=HC
Medtr5g084210 Mt4.0v1 chr5 36344964-36346048 known SSP NodGRP1B 0.770 147 Nodule-specific Glycine Rich Peptide MtNodGRP1C conf_class=HC
Medtr5g084260 Mt4.0v1 chr5 36357245-36358005 known SSP NodGRP1E 0.856 113 Nodule-specific Glycine Rich Peptide conf_class=HC
Medtr5g084270 Mt4.0v1 chr5 36363626-36364533 known SSP NodGRP37 0.904 127 Nodule-specific Glycine Rich Peptide conf_class=HC
Medtr5g084320 Mt4.0v1 chr5 36390106-36390867 known SSP NodGRP38 0.907 110 Nodule-specific Glycine Rich Peptide conf_class=HC
Medtr5g084410 Mt4.0v1 chr5 36410933-36414548 known SSP NodGRP39 0.862 113 hypothetical protein conf_class=HC
Medtr5g084670 Mt4.0v1 chr5 36529145-36531191 known SSP NodGRP40 0.856 110 Nodule-specific Glycine Rich Peptide conf_class=HC
Medtr6g047850 Mt4.0v1 chr6 17253901-17254197 known SSP NodGRP41 0.101 98 hypothetical protein conf_class=LC
Medtr6g086435 Mt4.0v1 chr6 32504604-32506682 known SSP NodGRP42 0.812 119 pectinesterase conf_class=LC
Medtr7g046925 Mt4.0v1 chr7 16531014-16531274 known SSP NodGRP43 0.119 86 hypothetical protein conf_class=LC
Medtr7g047330 Mt4.0v1 chr7 16634388-16634648 known SSP NodGRP44 0.119 86 hypothetical protein conf_class=LC
Medtr7g085640 Mt4.0v1 chr7 33199809-33201960 known SSP NodGRP45 0.122 202 Gar1/Naf1 RNA-binding region protein conf_class=HC
Medtr8g098820 Mt4.0v1 chr8 41306089-41306508 known SSP NodGRP46 0.102 139 hypothetical protein conf_class=LC
MT35v5_Medtr1g009580 Mt3.5v5 chr1 2020828-2024680 known SSP NodGRP47 0.110 190 RNA-binding protein Rsf1 conf_class=F
MT35v5_Medtr4g102190 Mt3.5v5 chr4 35460086-35467754 known SSP NodGRP48 0.100 336 Sucrose transporter conf_class=I
MT4Noble_023010 Mt4.0v1 chr4 7486532-7486618 known SSP NodGRP49 0.688 28 Synaptobrevin-like protein
MT4Noble_037657 Mt4.0v1 chr6 6458151-6459625 known SSP NodGRP50 0.112 191