• Gene Family Details



FAMILY INFORMATION


Family name LEED..PEED (LP)
Class Non-Cys, non-PTM
Mode of Action Unknown
Post-translational modifications (PTMs) -
Receptor -
Evolutionary Range Medicago genus only
Function Necessary for proper nodulation and persistence of bacteroids
References
  • Genomic characterization of the LEED..PEEDs, a gene family unique to the medicago lineage Genomic characterization of the LEED..PEEDs, a gene family unique to the medicago lineage G3 (Bethesda) . 2014 Aug 25;4(10):2003-12.

HMM PROFILE


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GENE MEMBERS DETAILS


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Gene Assembly Chromossome Coordinates SSP Type SSP Family member SignalP D-value Protein Length Annotation
Medtr1g074410 Mt4.0v1 chr1 33057168-33059084 known SSP LP14 0.929 558 transmembrane protein, putative conf_class=LC
Medtr1g074840 Mt4.0v1 chr1 33070572-33071416 known SSP LP15 0.716 87 hypothetical protein conf_class=HC
Medtr2g035240 Mt4.0v1 chr2 13574724-13574978 known SSP LP21 0.901 84 transmembrane protein, putative conf_class=LC
Medtr2g035250 Mt4.0v1 chr2 13571120-13571650 known SSP LP20 0.853 84 transmembrane protein, putative conf_class=LC
Medtr2g035290 Mt4.0v1 chr2 13563732-13564265 known SSP LP16 0.881 87 RALF related conf_class=HC
Medtr2g103370 Mt4.0v1 chr2 44496962-44506815 known SSP LP17 0.113 859 nucleoporin interacting component, putative conf_class=HC
Medtr4g011680 Mt4.0v1 chr4 2913403-2914010 known SSP LP1 0.890 74 leguminosin group567 LEED...PEED secreted peptide conf_class=HC
Medtr7g056460 Mt4.0v1 chr7 20022555-20022824 known SSP LP2 0.898 89 leguminosin group567 LEED...PEED secreted peptide conf_class=HC
Medtr7g056473 Mt4.0v1 chr7 20032952-20033639 known SSP LP3 0.892 76 leguminosin group567 LEED...PEED secreted peptide conf_class=HC
Medtr7g056480 Mt4.0v1 chr7 20038549-20039038 known SSP LP4 0.776 71 leguminosin group567 LEED...PEED secreted peptide conf_class=HC
Medtr7g056490 Mt4.0v1 chr7 20044118-20044666 known SSP LP5 0.890 66 leguminosin group567 LEED...PEED secreted peptide conf_class=HC
Medtr7g056493 Mt4.0v1 chr7 20048715-20049189 known SSP LP6 0.740 70 leguminosin group567 LEED...PEED secreted peptide conf_class=HC
Medtr7g056500 Mt4.0v1 chr7 20054294-20054769 known SSP LP7 0.826 72 leguminosin group567 LEED...PEED secreted peptide conf_class=HC
Medtr7g056513 Mt4.0v1 chr7 20067402-20067602 known SSP LP8 0.793 66 leguminosin group567 LEED...PEED secreted peptide conf_class=HC
Medtr7g056517 Mt4.0v1 chr7 20071455-20072311 known SSP LP9 0.786 83 leguminosin group567 LEED...PEED secreted peptide conf_class=HC
Medtr7g056523 Mt4.0v1 chr7 20078497-20078967 known SSP LP10 0.857 82 leguminosin group567 LEED...PEED secreted peptide conf_class=HC
Medtr7g056527 Mt4.0v1 chr7 20084786-20085360 known SSP LP11 0.745 74 leguminosin group567 LEED...PEED secreted peptide conf_class=HC
Medtr7g056543 Mt4.0v1 chr7 20097468-20097779 known SSP LP12 0.838 81 leguminosin group567 LEED...PEED secreted peptide conf_class=HC
Medtr7g056557 Mt4.0v1 chr7 20116050-20116893 known SSP LP13 0.884 83 leguminosin group567 LEED...PEED secreted peptide conf_class=HC
Medtr8g064080 Mt4.0v1 chr8 26864053-26864669 known SSP LP18 0.118 103 hypothetical protein conf_class=HC
MT4Noble_009735 Mt4.0v1 chr2 14203273-14203356 known SSP LP22 0.507 27 Transmembrane protein, putative
MT4Noble_023974 Mt4.0v1 chr4 14908850-14909128 known SSP LP19 0.182 92 Integrase, catalytic region Zinc finger, CCHC-type Peptidase aspartic, catalytic