• Gene Family Details



FAMILY INFORMATION


Family name Low-molecular weight Cys-rich (LCR)
Class Cys-rich
Mode of Action Unknown
Post-translational modifications (PTMs) 8 Cysteines
Receptor -
Evolutionary Range -
Function -
References
  • Two large Arabidopsis thaliana gene families are homologous to the Brassica gene superfamily that encodes pollen coat proteins and the male component of the self-incompatibility response Two large Arabidopsis thaliana gene families are homologous to the Brassica gene superfamily that encodes pollen coat proteins and the male component of the self-incompatibility response Plant Mol Biol . 2001 May;46(1):17-34.

HMM PROFILE


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GENE MEMBERS DETAILS


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Gene Assembly Chromossome Coordinates SSP Type SSP Family member SignalP D-value Protein Length Annotation
Medtr1557s0010 Mt4.0v1 scaffold1557 664-1132 known SSP LCR1 0.571 97 Defensin/LCR related conf_class=HC
Medtr1g013950 Mt4.0v1 chr1 3192758-3193176 known SSP LCR2 0.858 68 LCR related conf_class=HC
Medtr1g014530 Mt4.0v1 chr1 3183175-3183603 known SSP LCR3 0.776 80 LCR related conf_class=HC
Medtr1g014570 Mt4.0v1 chr1 3201576-3201994 known SSP LCR4 0.858 68 LCR related conf_class=HC
Medtr1g014590 Mt4.0v1 chr1 3210413-3210831 known SSP LCR5 0.858 68 LCR related conf_class=HC
Medtr1g040380 Mt4.0v1 chr1 14942214-14942569 known SSP LCR6 0.928 73 LCR related conf_class=HC
Medtr1g040385 Mt4.0v1 chr1 14946125-14946595 known SSP LCR7 0.923 73 LCR related conf_class=HC
Medtr1g040390 Mt4.0v1 chr1 14952221-14952576 known SSP LCR8 0.928 73 LCR related conf_class=HC
Medtr1g047530 Mt4.0v1 chr1 17970283-17970604 known SSP LCR86 0.930 70 LCR conf_class=HC
Medtr1g048790 Mt4.0v1 chr1 18818061-18818415 known SSP LCR87 0.773 73 LCR conf_class=HC
Medtr2g018410 Mt4.0v1 chr2 5791332-5791775 known SSP LCR9 0.901 73 LCR related conf_class=HC
Medtr2g060160 Mt4.0v1 chr2 24790702-24791193 known SSP LCR54 0.800 77 transmembrane protein, putative conf_class=LC
Medtr2g062870 Mt4.0v1 chr2 26589534-26589898 known SSP LCR10 0.823 70 LCR related conf_class=HC
Medtr2g063055 Mt4.0v1 chr2 26656809-26658058 known SSP LCR90 0.860 179 LCR related conf_class=HC
Medtr2g075115 Mt4.0v1 chr2 31413758-31414099 known SSP LCR11 0.841 74 LCR related conf_class=HC
Medtr2g075165 Mt4.0v1 chr2 31432220-31432942 known SSP LCR12 0.870 74 LCR related conf_class=HC
Medtr2g075190 Mt4.0v1 chr2 31435783-31437044 known SSP LCR13 0.861 78 LCR related conf_class=HC
Medtr2g075235 Mt4.0v1 chr2 31447457-31448105 known SSP LCR14 0.806 78 LCR conf_class=HC
Medtr2g075275 Mt4.0v1 chr2 31469714-31470195 known SSP LCR15 0.732 73 LCR related conf_class=HC
Medtr2g075320 Mt4.0v1 chr2 31482331-31485484 known SSP LCR101 0.717 309 LCR related conf_class=HC
Medtr2g075953 Mt4.0v1 chr2 31793393-31793751 known SSP LCR16 0.784 73 LCR related conf_class=HC
Medtr2g075985 Mt4.0v1 chr2 31808673-31809155 known SSP LCR17 0.870 73 LCR related conf_class=HC
Medtr2g076875 Mt4.0v1 chr2 32169342-32169992 known SSP LCR18 0.837 74 LCR related conf_class=HC
Medtr2g076975 Mt4.0v1 chr2 32207851-32208213 known SSP LCR19 0.889 77 LCR related conf_class=HC
Medtr2g077020 Mt4.0v1 chr2 32221240-32221602 known SSP LCR20 0.885 77 LCR related conf_class=HC
Medtr2g077035 Mt4.0v1 chr2 32226867-32227279 known SSP LCR21 0.703 79 LCR related conf_class=HC
Medtr2g077055 Mt4.0v1 chr2 32232747-32233157 known SSP LCR22 0.685 84 LCR related conf_class=HC
Medtr2g077240 Mt4.0v1 chr2 32244586-32245062 known SSP LCR23 0.836 72 LCR related conf_class=HC
Medtr2g077490 Mt4.0v1 chr2 32255045-32255705 known SSP LCR24 0.733 81 LCR related conf_class=HC
Medtr2g078410 Mt4.0v1 chr2 32671259-32671679 known SSP LCR25 0.828 75 LCR related conf_class=HC
Medtr2g082175 Mt4.0v1 chr2 34597808-34598572 known SSP LCR26 0.882 74 LCR related conf_class=HC
Medtr2g082195 Mt4.0v1 chr2 34607372-34607771 known SSP LCR27 0.886 74 LCR related conf_class=HC
Medtr2g449960 Mt4.0v1 chr2 22041382-22041833 known SSP LCR28 0.898 69 LCR related conf_class=HC
Medtr2g461320 Mt4.0v1 chr2 25328482-25329726 known SSP LCR29 0.465 91 transmembrane protein, putative conf_class=LC
Medtr3g024200 Mt4.0v1 chr3 7463175-7463517 known SSP LCR47 0.876 89 LCR conf_class=HC
Medtr3g024220 Mt4.0v1 chr3 7467644-7468009 known SSP LCR48 0.905 90 LCR conf_class=HC
Medtr3g024270 Mt4.0v1 chr3 7481258-7481618 known SSP LCR49 0.874 89 LCR conf_class=HC
Medtr3g024310 Mt4.0v1 chr3 7498008-7498633 known SSP LCR50 0.877 91 LCR conf_class=HC
Medtr3g049570 Mt4.0v1 chr3 18478959-18479355 known SSP LCR59 0.863 69 LCR related conf_class=HC
Medtr3g049730 Mt4.0v1 chr3 19581393-19582117 known SSP LCR60 0.811 68 LCR related conf_class=HC
Medtr3g049755 Mt4.0v1 chr3 19593523-19594331 known SSP LCR61 0.848 72 LCR related conf_class=HC
Medtr3g049780 Mt4.0v1 chr3 19603694-19604657 known SSP LCR62 0.901 65 LCR related conf_class=HC
Medtr3g049795 Mt4.0v1 chr3 19609635-19610084 known SSP LCR63 0.886 72 transmembrane protein, putative conf_class=LC
Medtr3g049800 Mt4.0v1 chr3 19612268-19613013 known SSP LCR64 0.872 92 transmembrane protein, putative conf_class=HC
Medtr3g049820 Mt4.0v1 chr3 19617294-19618073 known SSP LCR65 0.911 69 LCR related conf_class=HC
Medtr3g049850 Mt4.0v1 chr3 19626108-19626881 known SSP LCR66 0.848 70 LCR related conf_class=HC
Medtr3g049935 Mt4.0v1 chr3 19653628-19654382 known SSP LCR67 0.792 70 transmembrane protein, putative conf_class=LC
Medtr3g071605 Mt4.0v1 chr3 32150559-32151018 known SSP LCR68 0.399 74 transmembrane protein, putative conf_class=LC
Medtr3g450060 Mt4.0v1 chr3 17154733-17155371 known SSP LCR51 0.749 88 LCR conf_class=HC
Medtr3g453090 Mt4.0v1 chr3 19539072-19539817 known SSP LCR69 0.918 69 LCR related conf_class=HC
Medtr3g453120 Mt4.0v1 chr3 19549265-19549688 known SSP LCR70 0.863 65 LCR related conf_class=HC
Medtr3g453130 Mt4.0v1 chr3 19557263-19557680 known SSP LCR71 0.834 69 LCR conf_class=HC
Medtr3g453140 Mt4.0v1 chr3 19563515-19564111 known SSP LCR72 0.749 69 LCR related conf_class=HC
Medtr4g010940 Mt4.0v1 chr4 2538051-2538582 known SSP LCR73 0.732 73 LCR conf_class=HC
Medtr4g025320 Mt4.0v1 chr4 8535551-8536122 known SSP LCR74 0.825 73 LCR conf_class=HC
Medtr5g042465 Mt4.0v1 chr5 18671343-18671654 known SSP LCR88 0.844 76 LCR conf_class=HC
Medtr5g042485 Mt4.0v1 chr5 18675144-18675455 known SSP LCR89 0.845 75 LCR conf_class=HC
Medtr5g074470 Mt4.0v1 chr5 31647188-31647803 known SSP LCR100 0.823 87 transmembrane protein, putative conf_class=LC
Medtr5g075030 Mt4.0v1 chr5 31872175-31873669 known SSP LCR99 0.854 72 transmembrane protein, putative conf_class=HC
Medtr6g051770 Mt4.0v1 chr6 18025209-18025600 known SSP LCR75 0.902 63 LCR related conf_class=HC
Medtr6g088485 Mt4.0v1 chr6 33653699-33654259 known SSP LCR30 0.844 75 LCR related conf_class=HC
Medtr6g088495 Mt4.0v1 chr6 33658330-33659487 known SSP LCR31 0.854 78 Nodule Cysteine-Rich (NCR) secreted peptide conf_class=HC
Medtr6g407070 Mt4.0v1 chr6 1372270-1372679 known SSP LCR32 0.849 71 LCR related conf_class=HC
Medtr6g407080 Mt4.0v1 chr6 1375067-1375474 known SSP LCR33 0.778 71 LCR related conf_class=HC
Medtr6g407090 Mt4.0v1 chr6 1380018-1380427 known SSP LCR34 0.849 71 LCR related conf_class=HC
Medtr6g407100 Mt4.0v1 chr6 1382815-1383222 known SSP LCR35 0.778 71 LCR related conf_class=HC
Medtr7g033870 Mt4.0v1 chr7 12421162-12421525 known SSP LCR76 0.932 70 Nodule Cysteine-Rich (NCR) secreted peptide conf_class=HC
Medtr7g050325 Mt4.0v1 chr7 16777141-16777733 known SSP LCR55 0.866 92 LCR related conf_class=HC
Medtr7g050395 Mt4.0v1 chr7 16801795-16801878 known SSP LCR96 0.114 27 Nodule Cysteine-Rich (NCR) secreted peptide conf_class=HC
Medtr7g056683 Mt4.0v1 chr7 20308618-20308731 known SSP LCR93 0.097 37 Nodule Cysteine-Rich (NCR) secreted peptide conf_class=HC
Medtr7g059420 Mt4.0v1 chr7 21581835-21582691 known SSP LCR77 0.792 53 transmembrane protein, putative conf_class=LC
Medtr7g059425 Mt4.0v1 chr7 21586653-21587305 known SSP LCR78 0.954 58 LCR related conf_class=HC
Medtr7g059435 Mt4.0v1 chr7 21593456-21594383 known SSP LCR79 0.925 63 LCR related conf_class=HC
Medtr7g059440 Mt4.0v1 chr7 21601469-21601794 known SSP LCR80 0.906 76 LCR conf_class=HC
Medtr7g059445 Mt4.0v1 chr7 21605005-21605901 known SSP LCR81 0.893 71 LCR related conf_class=HC
Medtr7g059455 Mt4.0v1 chr7 21611255-21612312 known SSP LCR82 0.884 62 LCR conf_class=HC
Medtr7g060395 Mt4.0v1 chr7 21820766-21821983 known SSP LCR91 0.913 98 LCR conf_class=HC
Medtr7g060500 Mt4.0v1 chr7 21864409-21865239 known SSP LCR36 0.866 80 LCR conf_class=HC
Medtr7g060520 Mt4.0v1 chr7 21868594-21869200 known SSP LCR56 0.861 78 LCR conf_class=HC
Medtr7g060550 Mt4.0v1 chr7 21885963-21886431 known SSP LCR37 0.927 76 transmembrane protein, putative conf_class=LC
Medtr7g060595 Mt4.0v1 chr7 21913000-21913548 known SSP LCR38 0.920 79 LCR conf_class=HC
Medtr7g060615 Mt4.0v1 chr7 21921684-21922080 known SSP LCR39 0.925 79 LCR related conf_class=HC
Medtr7g062510 Mt4.0v1 chr7 22739205-22739785 known SSP LCR57 0.855 88 LCR conf_class=HC
Medtr7g066500 Mt4.0v1 chr7 24203510-24203877 known SSP LCR83 0.911 69 LCR related conf_class=HC
Medtr7g446540 Mt4.0v1 chr7 15876217-15876798 known SSP LCR58 0.842 91 Nodule Cysteine-Rich (NCR) secreted peptide conf_class=HC
Medtr8g046045 Mt4.0v1 chr8 18017130-18017562 known SSP LCR40 0.768 76 LCR related conf_class=HC
Medtr8g046075 Mt4.0v1 chr8 18030926-18031302 known SSP LCR41 0.887 76 transmembrane protein, putative conf_class=LC
Medtr8g046110 Mt4.0v1 chr8 18039401-18039774 known SSP LCR42 0.891 76 LCR related conf_class=HC
Medtr8g463120 Mt4.0v1 chr8 22188536-22189282 known SSP LCR43 0.913 70 LCR related conf_class=HC
MT35v5_contig_109628_1 Mt3.5v5 contig_109628 14-178 known SSP LCR95 0.141 54 LCR conf_class=L
MT35v5_contig_165377_3 Mt3.5v5 contig_165377 1622-1846 known SSP LCR44 0.300 74 Unknown protein conf_class=L
MT35v5_contig_239447_1 Mt3.5v5 contig_239447 33-185 known SSP LCR92 0.120 50 LCR related CCP conf_class=L
MT35v5_contig_77082_1 Mt3.5v5 contig_77082 929-1090 known SSP LCR94 0.116 53 LCR related CCP conf_class=L
MT35v5_contig_98939_2 Mt3.5v5 contig_98939 396-521 known SSP LCR45 0.263 42 LCR-like protein conf_class=L
MT35v5_Medtr2g031060 Mt3.5v5 chr2 10619808-10620822 known SSP LCR52 0.369 113 Defensin/LCR-like protein conf_class=I
MT35v5_Medtr2g103675 Mt3.5v5 chr2 33720071-33720190 known SSP LCR98 0.114 39 Defensin/LCR-like protein conf_class=L
MT35v5_Medtr4g128085 Mt3.5v5 chr4 44712537-44712752 known SSP LCR53 0.367 71 Defensin/LCR-like protein conf_class=L
MT35v5_Medtr6g009690 Mt3.5v5 chr6 2386936-2387130 known SSP LCR97 0.876 64 hypothetical protein conf_class=L
MT4Noble_011989 Mt4.0v1 chr2 31435783-31439095 known SSP LCR46 0.705 66 LCR-like protein
MT4Noble_016523 Mt4.0v1 chr3 19593571-19593720 known SSP LCR84 0.712 49 LCR-like protein
MT4Noble_016535 Mt4.0v1 chr3 19646656-19646751 known SSP LCR85 0.633 31 LCR-like protein