• Gene Family Details



FAMILY INFORMATION


Family name Clavata/Embryo Surrounding Region (CLE)
Class PTM
Mode of Action Signal
Post-translational modifications (PTMs) 2 Hydroxyproline
Receptor CLV1/2, CRN, ACR4, TDR/PXY, BAM1/2/3, SKM1/2/3
Evolutionary Range All angiosperms
Function Regulates nodulation and suppresses stem cell differentiation in root, shoot and procambium. Autoregulation of nodule number
References
  • Root-derived CLE glycopeptides control nodulation by direct binding to HAR1 receptor kinase Root-derived CLE glycopeptides control nodulation by direct binding to HAR1 receptor kinase Nat Commun . 2013;4:2191.
  • Bioinformatic analysis of the CLE signaling peptide family Bioinformatic analysis of the CLE signaling peptide family BMC Plant Biol . 2008 Jan 3;8:1.
  • CLE peptides and their signaling pathways in plant development CLE peptides and their signaling pathways in plant development J Exp Bot . 2016 Aug;67(16):4813-26.

HMM PROFILE


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GENE MEMBERS DETAILS


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Gene Assembly Chromossome Coordinates SSP Type SSP Family member SignalP D-value Protein Length Annotation
Medtr1g018700 Mt4.0v1 chr1 5449752-5450066 known SSP CLE20 0.469 91 Clavata3/ESR (CLE) gene family member MtCLE20 conf_class=HC
Medtr1g062850 Mt4.0v1 chr1 27531440-27534075 known SSP CLE27 0.919 240 transmembrane protein, putative conf_class=LC
Medtr1g093800 Mt4.0v1 chr1 42088420-42089378 known SSP CLE18 0.673 104 Clavata3/ESR (CLE) gene family member MtCLE18 conf_class=HC
Medtr1g100733 Mt4.0v1 chr1 45666650-45667794 known SSP CLE05 0.824 84 Clavata3/ESR (CLE) gene family member MtCLE05 conf_class=HC
Medtr1g106920 Mt4.0v1 chr1 48060869-48061138 known SSP CLE28 0.785 89 transmembrane protein, putative conf_class=HC
Medtr1g110820 Mt4.0v1 chr1 50032516-50033966 known SSP CLE03 0.808 99 Clavata3/ESR (CLE) gene family member MtCLE03 conf_class=HC
Medtr2g015445 Mt4.0v1 chr2 4575877-4576113 known SSP CLE29 0.875 78 Clavata3/ESR (CLE) gene family member conf_class=HC
Medtr2g038665 Mt4.0v1 chr2 16905712-16905957 known SSP CLE30 0.925 81 Clavata3/ESR (CLE) gene family member conf_class=HC
Medtr2g078130 Mt4.0v1 chr2 32437418-32437841 known SSP CLE31 0.882 85 Clavata3/ESR (CLE) gene family member conf_class=HC
Medtr2g078140 Mt4.0v1 chr2 32444504-32444756 known SSP CLE32 0.904 83 Clavata3/ESR (CLE) gene family member conf_class=HC
Medtr2g078160 Mt4.0v1 chr2 32459963-32460332 known SSP CLE33 0.851 75 Clavata3/ESR (CLE) gene family member conf_class=HC
Medtr2g087180 Mt4.0v1 chr2 36645611-36646743 known SSP CLE22 0.904 181 hypothetical protein conf_class=LC
Medtr2g091120 Mt4.0v1 chr2 39231890-39237193 known SSP CLE34 0.102 87 hypothetical protein conf_class=HC
Medtr2g091125 Mt4.0v1 chr2 39246726-39247439 known SSP CLE35 0.762 92 Clavata3/ESR (CLE) gene family member conf_class=HC
Medtr2g437780 Mt4.0v1 chr2 14913194-14915486 known SSP CLE36 0.103 114 hypothetical protein conf_class=HC
Medtr2g437800 Mt4.0v1 chr2 14922091-14924116 known SSP CLE37 0.119 152 CLE03 protein conf_class=HC
Medtr3g037730 Mt4.0v1 chr3 13873747-13874477 known SSP CLE11 0.702 83 Clavata3/ESR (CLE) gene family member MtCLE11 conf_class=HC
Medtr3g080060 Mt4.0v1 chr3 36207269-36207546 known SSP CLE23 0.869 72 Clavata3/ESR (CLE) gene family member MtCLE23 conf_class=HC
Medtr4g051618 Mt4.0v1 chr4 18583841-18584193 known SSP CLE38 0.893 75 transmembrane protein, putative conf_class=LC
Medtr4g066100 Mt4.0v1 chr4 24906022-24906560 known SSP CLE39 0.815 82 Clavata3/ESR (CLE) gene family member conf_class=HC
Medtr4g079610 Mt4.0v1 chr4 30793652-30794412 known SSP CLE13 0.593 84 Clavata3/ESR (CLE) gene family member MtCLE13 conf_class=HC
Medtr4g079630 Mt4.0v1 chr4 30800276-30800791 known SSP CLE12 0.494 81 Clavata3/ESR (CLE) gene family member MtCLE12 conf_class=HC
Medtr4g082920 Mt4.0v1 chr4 32235471-32235749 known SSP CLE40 0.887 92 Clavata3/ESR (CLE) gene family member conf_class=HC
Medtr4g084520 Mt4.0v1 chr4 32892006-32893902 known SSP CLE41 0.116 159 Clavata3/ESR (CLE) gene family member conf_class=HC
Medtr4g087850 Mt4.0v1 chr4 34563224-34563764 known SSP CLE42 0.753 74 hypothetical protein conf_class=HC
Medtr4g126940 Mt4.0v1 chr4 52604678-52605086 known SSP CLE44 0.818 89 Clavata3/ESR (CLE) gene family member conf_class=HC
Medtr5g014860 Mt4.0v1 chr5 5052966-5054490 known SSP CLE04 0.790 66 Clavata3/ESR (CLE) gene family member MtCLE04 conf_class=HC
Medtr5g037140 Mt4.0v1 chr5 16208689-16211769 known SSP CLE01/CLE25 0.426 124 transmembrane protein, putative conf_class=HC
Medtr5g040640 Mt4.0v1 chr5 17856987-17857885 known SSP CLE24 0.719 108 Clavata3/ESR (CLE) gene family member MtCLE24 conf_class=HC
Medtr5g043830 Mt4.0v1 chr5 19252217-19253164 known SSP CLE16 0.903 101 Clavata3/ESR (CLE) gene family member MtCLE16 conf_class=HC
Medtr5g056935 Mt4.0v1 chr5 23427470-23428023 known SSP CLE45 0.859 84 Clavata3/ESR (CLE) gene family member conf_class=HC
Medtr5g085990 Mt4.0v1 chr5 37176480-37177432 known SSP CLE17 0.924 72 Clavata3/ESR (CLE) gene family member MtCLE17 conf_class=HC
Medtr5g089080 Mt4.0v1 chr5 38716369-38716623 known SSP CLE21 0.916 84 Clavata3/ESR (CLE) gene family member MtCLE21 conf_class=HC
Medtr6g009390 Mt4.0v1 chr6 2756924-2758541 known SSP CLE02 0.181 68 Clavata3/ESR (CLE) gene family member MtCLE02 conf_class=HC
Medtr6g054925 Mt4.0v1 chr6 19620144-19620385 known SSP CLE10 0.907 74 Clavata3/ESR (CLE) gene family member MtCLE10 conf_class=HC
Medtr7g058790 Mt4.0v1 chr7 21149725-21150700 known SSP CLE06 0.533 117 Clavata3/ESR (CLE) gene family member MtCLE06 conf_class=HC
Medtr7g084100 Mt4.0v1 chr7 32428499-32429164 known SSP CLE14 0.666 221 transmembrane protein, putative conf_class=LC
Medtr7g084110 Mt4.0v1 chr7 32430088-32430903 known SSP CLE09 0.623 157 hypothetical protein conf_class=LC
Medtr7g084130 Mt4.0v1 chr7 32437149-32437445 known SSP CLE46 0.623 98 hypothetical protein conf_class=LC
Medtr7g089320 Mt4.0v1 chr7 34939366-34940163 known SSP CLE07 0.906 85 Clavata3/ESR (CLE) gene family member MtCLE07 conf_class=HC
Medtr7g093050 Mt4.0v1 chr7 36960361-36961326 known SSP CLE49 0.731 92 transmembrane protein, putative conf_class=HC
Medtr7g094080 Mt4.0v1 chr7 37442044-37442268 known SSP CLE50 0.873 74 Clavata3/ESR (CLE) gene family member conf_class=HC
Medtr8g042980 Mt4.0v1 chr8 16651685-16652451 known SSP CLE51 0.886 85 Clavata3/ESR (CLE) gene family member conf_class=HC
Medtr8g076990 Mt4.0v1 chr8 32679901-32680143 known SSP CLE08 0.117 80 Clavata3/ESR (CLE) gene family member MtCLE08 conf_class=HC
Medtr8g096970 Mt4.0v1 chr8 40711973-40712256 known SSP CLE52 0.865 89 Clavata3/ESR (CLE) gene family member conf_class=HC
Medtr8g463700 Mt4.0v1 chr8 22469121-22469422 known SSP CLE53 0.797 82 Clavata3/ESR (CLE) gene family member conf_class=HC
MT4Noble_057157 Mt4.0v1 chr7 46832670-46832807 known SSP CLE19 0.097 46 Uncharacterized protein
MT4Noble_012751 Mt4.0v1 chr2 36640323-36640517 known SSP CLE15 0.694 64 CLAVATA3 protein
MT4Noble_057128 Mt4.0v1 chr1 27528684-27529037 known SSP CLE26 0.882 117 Transmembrane protein, putative
MT4Noble_057129 Mt4.0v1 chr4 34572155-34572508 known SSP CLE43 0.891 117 Uncharacterized protein
MT4Noble_057130 Mt4.0v1 chr7 32590148-32590528 known SSP CLE47 0.663 126 Transmembrane protein, putative
MT4Noble_057131 Mt4.0v1 chr7 32594246-32594509 known SSP CLE48 0.117 87 Uncharacterized protein