Co-expression Profiling under Symbiotic Interactions
Co-expression Modules over selected samples
Module ID Number of genes Enriched GO terms (Term/Q-value/Description) Enriched KEGG pathway (Term/Q-value/Description)
Module #1 205 Details
03060  9.32E-02  Protein export
00900  9.32E-02  Terpenoid backbone biosynthesis
Module #2 127 Details
Molecular Function:
GO:0043021  1.06E-02  ribonucleoprotein complex binding
GO:0044877  1.10E-02  macromolecular complex binding
Biological Process:
GO:0022613  5.86E-04  ribonucleoprotein complex biogenesis
GO:0042254  4.16E-02  ribosome biogenesis
GO:0042273  4.24E-02  ribosomal large subunit biogenesis
GO:0006414  4.24E-02  translational elongation
Cellular Component:
GO:0044391  1.38E-13  ribosomal subunit
GO:0015935  1.65E-08  small ribosomal subunit
GO:0015934  2.21E-04  large ribosomal subunit
GO:0005730  1.93E-03  nucleolus
GO:0030687  5.59E-03  preribosome, large subunit precursor
GO:0022626  7.03E-03  cytosolic ribosome
GO:0022627  1.27E-02  cytosolic small ribosomal subunit
GO:0044445  1.80E-02  cytosolic part
GO:0005741  3.10E-02  mitochondrial outer membrane
03010  6.38E-85  Ribosome
Module #3 125 Details
Molecular Function:
GO:0005509  2.36E-02  calcium ion binding
00902  3.01E-02  Monoterpenoid biosynthesis
Module #4 122 Details
Molecular Function:
GO:0016684  1.44E-03  oxidoreductase activity, acting on peroxide as acceptor
GO:0004601  1.44E-03  peroxidase activity
GO:0016209  1.77E-03  antioxidant activity
GO:0008172  4.17E-03  S-methyltransferase activity
GO:0008081  2.16E-02  phosphoric diester hydrolase activity
GO:0004372  2.16E-02  glycine hydroxymethyltransferase activity
GO:0003955  4.10E-02  NAD(P)H dehydrogenase (quinone) activity
Biological Process:
GO:0042744  7.35E-03  hydrogen peroxide catabolic process
GO:0042743  7.35E-03  hydrogen peroxide metabolic process
GO:0072593  7.38E-03  reactive oxygen species metabolic process
GO:0007155  4.20E-02  cell adhesion
GO:0022610  4.20E-02  biological adhesion
GO:0009069  4.24E-02  serine family amino acid metabolic process
GO:1901605  4.24E-02  alpha-amino acid metabolic process
Cellular Component:
GO:0048046  4.13E-10  apoplast
00514  6.03E-02  Other types of O-glycan biosynthesis
Module #5 120 Details
Biological Process:
GO:0008299  2.03E-03  isoprenoid biosynthetic process
GO:0006720  2.03E-03  isoprenoid metabolic process
GO:0016126  2.08E-03  sterol biosynthetic process
GO:0016125  4.26E-03  sterol metabolic process
GO:0044255  2.19E-02  cellular lipid metabolic process
GO:0006694  2.46E-02  steroid biosynthetic process
GO:1901617  2.81E-02  organic hydroxy compound biosynthetic process
GO:0008202  3.20E-02  steroid metabolic process
00900  1.17E-07  Terpenoid backbone biosynthesis
00860  5.32E-06  Porphyrin and chlorophyll metabolism
00053  5.69E-06  Ascorbate and aldarate metabolism
00072  5.69E-05  Synthesis and degradation of ketone bodies
00909  1.65E-04  Sesquiterpenoid and triterpenoid biosynthesis
00650  5.19E-04  Butanoate metabolism
00040  1.03E-02  Pentose and glucuronate interconversions
00100  3.32E-02  Steroid biosynthesis
00280  9.37E-02  Valine, leucine and isoleucine degradation
Module #6 117 Details
Molecular Function:
GO:0008171  6.97E-05  O-methyltransferase activity
04075  7.42E-04  Plant hormone signal transduction
00943  1.14E-02  Isoflavonoid biosynthesis
Module #7 111 Details
Molecular Function:
GO:0016830  1.19E-02  carbon-carbon lyase activity
GO:0004148  1.19E-02  dihydrolipoyl dehydrogenase activity
GO:0004014  2.58E-02  adenosylmethionine decarboxylase activity
GO:0016831  2.58E-02  carboxy-lyase activity
00300  1.32E-02  Lysine biosynthesis
Module #8 109 Details
Molecular Function:
GO:0016903  6.36E-03  oxidoreductase activity, acting on the aldehyde or oxo group of donors
GO:0016620  2.55E-02  oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
GO:0046527  2.55E-02  glucosyltransferase activity
GO:0035251  2.55E-02  UDP-glucosyltransferase activity
GO:0004332  3.62E-02  fructose-bisphosphate aldolase activity
Cellular Component:
GO:0044435  4.17E-06  plastid part
GO:0044434  4.17E-06  chloroplast part
GO:0009579  3.55E-04  thylakoid
GO:0009526  8.02E-04  plastid envelope
GO:0009941  8.02E-04  chloroplast envelope
GO:0031976  6.64E-03  plastid thylakoid
GO:0009534  6.64E-03  chloroplast thylakoid
GO:0009570  6.70E-03  chloroplast stroma
GO:0009532  7.99E-03  plastid stroma
GO:0015934  1.17E-02  large ribosomal subunit
GO:0031975  1.64E-02  envelope
GO:0031984  1.64E-02  organelle subcompartment
GO:0031967  1.64E-02  organelle envelope
GO:0044436  2.27E-02  thylakoid part
GO:0034357  2.93E-02  photosynthetic membrane
03010  1.16E-07  Ribosome
00710  1.48E-03  Carbon fixation in photosynthetic organisms
00195  6.01E-02  Photosynthesis
00010  6.17E-02  Glycolysis / Gluconeogenesis
Module #9 105 Details
Cellular Component:
GO:0009570  1.74E-05  chloroplast stroma
GO:0044435  1.74E-05  plastid part
GO:0044434  1.74E-05  chloroplast part
GO:0009532  1.74E-05  plastid stroma
GO:0009526  1.15E-04  plastid envelope
GO:0009941  1.15E-04  chloroplast envelope
GO:0031975  5.13E-03  envelope
GO:0031967  5.13E-03  organelle envelope
GO:0031976  1.75E-02  plastid thylakoid
GO:0009534  1.75E-02  chloroplast thylakoid
Module #10 105 Details
Molecular Function:
GO:0052736  1.65E-02  beta-glucanase activity
GO:0015925  3.82E-02  galactosidase activity
00480  2.41E-02  Glutathione metabolism
Module #11 100 Details
Cellular Component:
GO:0005740  3.82E-02  mitochondrial envelope
GO:0031966  3.82E-02  mitochondrial membrane
GO:0044429  4.89E-02  mitochondrial part
GO:0005743  4.89E-02  mitochondrial inner membrane
GO:0044455  4.89E-02  mitochondrial membrane part
Module #12 94 Details
00061  1.17E-03  Fatty acid biosynthesis
00780  1.47E-02  Biotin metabolism
Module #13 92 Details
00920  3.86E-02  Sulfur metabolism
Module #14 88 Details
00410  2.66E-02  beta-Alanine metabolism
Module #15 87 Details
Molecular Function:
GO:0051740  7.37E-03  ethylene binding
GO:0072328  7.37E-03  alkene binding
GO:0038199  7.37E-03  ethylene receptor activity
GO:0015002  2.94E-02  heme-copper terminal oxidase activity
GO:0004129  2.94E-02  cytochrome-c oxidase activity
GO:0004872  2.94E-02  receptor activity
GO:0016676  2.94E-02  oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
GO:0016675  2.94E-02  oxidoreductase activity, acting on a heme group of donors
GO:0060089  2.94E-02  molecular transducer activity
Cellular Component:
GO:0045275  5.73E-03  respiratory chain complex III
GO:0070469  5.73E-03  respiratory chain
GO:1902495  5.73E-03  transmembrane transporter complex
GO:1990351  5.73E-03  transporter complex
GO:0005746  3.41E-02  mitochondrial respiratory chain
GO:0098803  3.41E-02  respiratory chain complex
Module #16 86 Details
Molecular Function:
GO:0016762  4.17E-02  xyloglucan:xyloglucosyl transferase activity
Module #17 81 Details
Module #18 81 Details
Module #19 80 Details
Module #20 80 Details
00620  3.94E-03  Pyruvate metabolism
00010  1.12E-02  Glycolysis / Gluconeogenesis
00020  7.87E-02  Citrate cycle (TCA cycle)
Module #21 79 Details
Cellular Component:
GO:0030312  1.35E-02  external encapsulating structure
GO:0005618  1.35E-02  cell wall
Module #22 77 Details
Cellular Component:
GO:0000502  2.24E-02  proteasome complex
GO:1905368  2.24E-02  peptidase complex
GO:1905369  2.24E-02  endopeptidase complex
Module #23 74 Details
Biological Process:
GO:0008202  3.14E-02  steroid metabolic process
GO:0006694  3.14E-02  steroid biosynthetic process
Module #24 74 Details
Module #25 72 Details
Cellular Component:
GO:0009570  3.31E-02  chloroplast stroma
GO:0009532  3.31E-02  plastid stroma
Module #26 67 Details
Biological Process:
GO:0019750  1.88E-03  chloroplast localization
GO:0009902  1.88E-03  chloroplast relocation
GO:0051644  1.88E-03  plastid localization
GO:0051667  1.88E-03  establishment of plastid localization
GO:0051656  1.62E-02  establishment of organelle localization
GO:0051640  1.70E-02  organelle localization
GO:0043269  4.59E-02  regulation of ion transport
GO:0031329  4.59E-02  regulation of cellular catabolic process
Module #27 66 Details
Cellular Component:
GO:0005911  4.44E-02  cell-cell junction
GO:0009506  4.44E-02  plasmodesma
GO:0055044  4.44E-02  symplast
GO:0030054  4.44E-02  cell junction
Module #28 66 Details
Module #29 66 Details
Cellular Component:
GO:0034357  3.52E-02  photosynthetic membrane
00010  6.52E-02  Glycolysis / Gluconeogenesis
00630  6.52E-02  Glyoxylate and dicarboxylate metabolism
00250  6.52E-02  Alanine, aspartate and glutamate metabolism
Module #30 65 Details
Biological Process:
GO:0042026  4.90E-04  protein refolding
GO:0006457  1.69E-03  protein folding
GO:0042254  8.16E-03  ribosome biogenesis
GO:0006364  1.16E-02  rRNA processing
GO:0046686  1.32E-02  response to cadmium ion
GO:0022613  1.32E-02  ribonucleoprotein complex biogenesis
GO:0045087  1.62E-02  innate immune response
GO:0006955  1.62E-02  immune response
GO:0002376  2.42E-02  immune system process
GO:0010038  3.80E-02  response to metal ion
03008  8.25E-03  Ribosome biogenesis in eukaryotes
Module #31 65 Details
Module #32 65 Details
Biological Process:
GO:0050777  3.20E-02  negative regulation of immune response
GO:0002683  3.20E-02  negative regulation of immune system process
GO:0010363  3.20E-02  regulation of plant-type hypersensitive response
Module #33 64 Details
Biological Process:
GO:0022613  1.46E-05  ribonucleoprotein complex biogenesis
GO:0042254  2.34E-05  ribosome biogenesis
GO:0000028  4.46E-02  ribosomal small subunit assembly
Cellular Component:
GO:0044391  4.25E-20  ribosomal subunit
GO:0015934  1.06E-09  large ribosomal subunit
GO:0015935  2.28E-09  small ribosomal subunit
GO:0022626  9.27E-06  cytosolic ribosome
GO:0022627  9.27E-06  cytosolic small ribosomal subunit
GO:0044445  3.71E-05  cytosolic part
03010  8.50E-42  Ribosome
Module #34 63 Details
Module #35 62 Details
Molecular Function:
GO:0004576  1.76E-02  oligosaccharyl transferase activity
Biological Process:
GO:0043413  1.02E-03  macromolecule glycosylation
GO:0009101  1.02E-03  glycoprotein biosynthetic process
GO:0006486  1.02E-03  protein glycosylation
GO:0070085  1.02E-03  glycosylation
GO:0009100  1.09E-03  glycoprotein metabolic process
GO:0006487  4.94E-02  protein N-linked glycosylation
Cellular Component:
GO:0005783  8.91E-04  endoplasmic reticulum
GO:0042175  2.25E-03  nuclear outer membrane-endoplasmic reticulum membrane network
GO:0005789  2.25E-03  endoplasmic reticulum membrane
GO:0044432  2.25E-03  endoplasmic reticulum part
GO:0005794  2.25E-03  Golgi apparatus
GO:0098805  2.25E-03  whole membrane
GO:0098588  3.09E-03  bounding membrane of organelle
GO:0031090  1.14E-02  organelle membrane
GO:0030660  1.45E-02  Golgi-associated vesicle membrane
GO:0005798  1.45E-02  Golgi-associated vesicle
GO:0044437  1.45E-02  vacuolar part
GO:0005774  1.45E-02  vacuolar membrane
GO:0030662  3.13E-02  coated vesicle membrane
GO:0012506  4.29E-02  vesicle membrane
GO:0030659  4.29E-02  cytoplasmic vesicle membrane
GO:0005773  4.29E-02  vacuole
00510  2.04E-03  N-Glycan biosynthesis
Module #36 61 Details
Cellular Component:
GO:0005783  4.02E-02  endoplasmic reticulum
04016  5.46E-02  MAPK signaling pathway - plant
Module #37 61 Details
Module #38 61 Details
Molecular Function:
GO:0004738  2.12E-02  pyruvate dehydrogenase activity
GO:0004739  2.12E-02  pyruvate dehydrogenase (acetyl-transferring) activity
GO:0016624  3.76E-02  oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
Biological Process:
GO:0071616  4.72E-02  acyl-CoA biosynthetic process
GO:0006084  4.72E-02  acetyl-CoA metabolic process
GO:0006086  4.72E-02  acetyl-CoA biosynthetic process from pyruvate
GO:0035384  4.72E-02  thioester biosynthetic process
00020  3.83E-02  Citrate cycle (TCA cycle)
00360  4.26E-02  Phenylalanine metabolism
00620  4.26E-02  Pyruvate metabolism
00010  9.15E-02  Glycolysis / Gluconeogenesis
Module #39 58 Details
Molecular Function:
GO:0016838  2.33E-07  carbon-oxygen lyase activity, acting on phosphates
GO:0016835  2.33E-07  carbon-oxygen lyase activity
GO:0010333  7.99E-06  terpene synthase activity
GO:0004420  4.03E-05  hydroxymethylglutaryl-CoA reductase (NADPH) activity
GO:0000287  4.15E-05  magnesium ion binding
GO:0004497  4.58E-03  monooxygenase activity
GO:0050661  1.37E-02  NADP binding
Biological Process:
GO:0033865  2.85E-06  nucleoside bisphosphate metabolic process
GO:0015936  2.85E-06  coenzyme A metabolic process
GO:0034032  2.85E-06  purine nucleoside bisphosphate metabolic process
GO:0008610  1.37E-02  lipid biosynthetic process
GO:0008299  1.59E-02  isoprenoid biosynthetic process
GO:0006720  1.79E-02  isoprenoid metabolic process
GO:0006732  1.82E-02  coenzyme metabolic process
GO:0044255  2.57E-02  cellular lipid metabolic process
GO:0006163  3.73E-02  purine nucleotide metabolic process
GO:0009259  3.90E-02  ribonucleotide metabolic process
GO:0072521  4.08E-02  purine-containing compound metabolic process
GO:0051186  4.08E-02  cofactor metabolic process
GO:0019693  4.08E-02  ribose phosphate metabolic process
Cellular Component:
GO:0044432  2.92E-02  endoplasmic reticulum part
00909  4.25E-05  Sesquiterpenoid and triterpenoid biosynthesis
00591  8.35E-05  Linoleic acid metabolism
00590  7.72E-04  Arachidonic acid metabolism
00900  2.44E-02  Terpenoid backbone biosynthesis
Module #40 57 Details
Module #41 57 Details
Biological Process:
GO:0009061  9.25E-03  anaerobic respiration
GO:0009605  9.25E-03  response to external stimulus
Cellular Component:
GO:0016604  2.75E-02  nuclear body
00280  2.65E-03  Valine, leucine and isoleucine degradation
00640  5.93E-03  Propanoate metabolism
Module #42 56 Details
Molecular Function:
GO:0016168  3.63E-25  chlorophyll binding
Biological Process:
GO:0015979  1.01E-33  photosynthesis
GO:0009765  8.65E-20  photosynthesis, light harvesting
GO:0019684  5.07E-17  photosynthesis, light reaction
GO:0006091  6.48E-13  generation of precursor metabolites and energy
Cellular Component:
GO:0034357  1.71E-41  photosynthetic membrane
GO:0009521  7.25E-39  photosystem
GO:0044436  8.08E-38  thylakoid part
GO:0009579  5.43E-37  thylakoid
GO:0009522  5.06E-36  photosystem I
GO:0042651  1.95E-30  thylakoid membrane
GO:0098796  6.51E-30  membrane protein complex
GO:0009535  1.57E-26  chloroplast thylakoid membrane
GO:0055035  1.57E-26  plastid thylakoid membrane
GO:0009523  1.39E-25  photosystem II
GO:0009534  1.50E-25  chloroplast thylakoid
GO:0031976  1.50E-25  plastid thylakoid
GO:0031984  4.43E-23  organelle subcompartment
GO:0044434  9.50E-21  chloroplast part
GO:0044435  1.35E-20  plastid part
GO:0009538  2.90E-09  photosystem I reaction center
GO:0009532  2.75E-04  plastid stroma
GO:0009508  2.88E-03  plastid chromosome
GO:0009570  3.43E-03  chloroplast stroma
GO:0009526  3.43E-03  plastid envelope
GO:0009941  3.43E-03  chloroplast envelope
GO:0000229  3.74E-03  cytoplasmic chromosome
GO:0042646  7.11E-03  plastid nucleoid
GO:0009295  7.49E-03  nucleoid
GO:0010287  7.87E-03  plastoglobule
GO:0009654  8.24E-03  photosystem II oxygen evolving complex
GO:0019898  2.55E-02  extrinsic component of membrane
GO:0031967  3.68E-02  organelle envelope
GO:0031975  3.68E-02  envelope
GO:1990204  3.88E-02  oxidoreductase complex
00196  5.54E-20  Photosynthesis - antenna proteins
00195  1.75E-11  Photosynthesis
00630  4.26E-02  Glyoxylate and dicarboxylate metabolism
Module #43 56 Details
Module #44 56 Details
Module #45 55 Details
Module #46 54 Details
Module #47 53 Details
Biological Process:
GO:0000097  3.52E-03  sulfur amino acid biosynthetic process
GO:0043102  3.52E-03  amino acid salvage
GO:0071267  3.52E-03  L-methionine salvage
GO:0000096  6.27E-03  sulfur amino acid metabolic process
GO:0044272  3.27E-02  sulfur compound biosynthetic process
GO:0006555  3.96E-02  methionine metabolic process
Module #48 52 Details
Module #49 51 Details
Module #50 49 Details
Molecular Function:
GO:0016635  1.23E-02  oxidoreductase activity, acting on the CH-CH group of donors, quinone or related compound as acceptor
Biological Process:
GO:0006099  1.06E-02  tricarboxylic acid cycle
GO:0009060  1.06E-02  aerobic respiration
Cellular Component:
GO:0005743  3.00E-02  mitochondrial inner membrane
GO:0019866  3.00E-02  organelle inner membrane
GO:0031966  3.84E-02  mitochondrial membrane
GO:0005740  3.88E-02  mitochondrial envelope
Module #51 48 Details
Module #52 47 Details
Molecular Function:
GO:0019843  3.03E-02  rRNA binding
Cellular Component:
GO:0044391  7.16E-03  ribosomal subunit
GO:0015935  1.77E-02  small ribosomal subunit
03010  4.84E-29  Ribosome
Module #53 47 Details
Cellular Component:
GO:0044429  3.81E-03  mitochondrial part
GO:0031090  3.81E-03  organelle membrane
GO:0098800  3.81E-03  inner mitochondrial membrane protein complex
GO:0030964  3.81E-03  NADH dehydrogenase complex
GO:0005743  3.81E-03  mitochondrial inner membrane
GO:0098798  3.81E-03  mitochondrial protein complex
GO:0005747  3.81E-03  mitochondrial respiratory chain complex I
GO:0044455  3.81E-03  mitochondrial membrane part
GO:0045271  3.81E-03  respiratory chain complex I
GO:0005746  5.18E-03  mitochondrial respiratory chain
GO:0019866  5.18E-03  organelle inner membrane
GO:0000932  5.18E-03  P-body
GO:0098803  5.18E-03  respiratory chain complex
GO:0035770  5.94E-03  ribonucleoprotein granule
GO:0036464  5.94E-03  cytoplasmic ribonucleoprotein granule
GO:0031966  8.07E-03  mitochondrial membrane
GO:0005740  1.02E-02  mitochondrial envelope
GO:0070469  1.75E-02  respiratory chain
GO:1990204  2.80E-02  oxidoreductase complex
Module #54 46 Details
Module #55 45 Details
Module #56 45 Details
Molecular Function:
GO:0008135  1.96E-04  translation factor activity, RNA binding
GO:0016875  2.99E-02  ligase activity, forming carbon-oxygen bonds
GO:0016876  2.99E-02  ligase activity, forming aminoacyl-tRNA and related compounds
GO:0004812  2.99E-02  aminoacyl-tRNA ligase activity
Biological Process:
GO:0022613  1.37E-03  ribonucleoprotein complex biogenesis
GO:0001731  2.94E-03  formation of translation preinitiation complex
GO:0002183  2.94E-03  cytoplasmic translational initiation
GO:0006413  3.09E-03  translational initiation
GO:0034660  2.18E-02  ncRNA metabolic process
GO:0034248  2.18E-02  regulation of cellular amide metabolic process
GO:0071826  2.95E-02  ribonucleoprotein complex subunit organization
GO:0022618  2.95E-02  ribonucleoprotein complex assembly
Cellular Component:
GO:0070993  2.34E-04  translation preinitiation complex
GO:0016282  2.34E-04  eukaryotic 43S preinitiation complex
GO:0033290  2.34E-04  eukaryotic 48S preinitiation complex
GO:0005852  7.67E-04  eukaryotic translation initiation factor 3 complex
03013  6.55E-03  RNA transport
Module #57 43 Details
Cellular Component:
GO:0005839  4.28E-02  proteasome core complex
GO:0048046  4.28E-02  apoplast
Module #58 42 Details
Module #59 42 Details
Molecular Function:
GO:0061134  3.63E-02  peptidase regulator activity
GO:0004866  3.63E-02  endopeptidase inhibitor activity
GO:0030414  3.63E-02  peptidase inhibitor activity
GO:0061135  3.63E-02  endopeptidase regulator activity
GO:0004857  3.78E-02  enzyme inhibitor activity
Module #60 41 Details
04626  9.68E-02  Plant-pathogen interaction
Module #61 41 Details
Cellular Component:
GO:0005887  2.88E-02  integral component of plasma membrane
GO:0031226  4.28E-02  intrinsic component of plasma membrane
Module #62 41 Details
Module #63 40 Details
Cellular Component:
GO:0098800  3.37E-03  inner mitochondrial membrane protein complex
GO:0098798  4.71E-03  mitochondrial protein complex
GO:0005743  5.97E-03  mitochondrial inner membrane
GO:0044455  5.97E-03  mitochondrial membrane part
GO:0005753  8.79E-03  mitochondrial proton-transporting ATP synthase complex
GO:0019866  8.79E-03  organelle inner membrane
GO:0031966  1.29E-02  mitochondrial membrane
GO:0031975  1.49E-02  envelope
GO:0031967  1.49E-02  organelle envelope
GO:0005740  1.49E-02  mitochondrial envelope
GO:0044429  1.88E-02  mitochondrial part
GO:0031090  2.30E-02  organelle membrane
GO:0045259  4.34E-02  proton-transporting ATP synthase complex
Module #64 39 Details
Module #65 38 Details
Module #66 37 Details
Module #67 36 Details
Module #68 34 Details